PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT33941.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 185aa    MW: 20780.9 Da    PI: 10.1535
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT33941.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.91.3e-181455243
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                + +n+ n  vtfskRr g++KKA+ELS+LC++e+a ++f ++
  PHT33941.1 14 KMKNQNNLPVTFSKRRDGLFKKASELSTLCGVEIATVVFPPS 55
                5789*********************************99765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MRKPTGRKKI NIEKMKNQNN LPVTFSKRRD GLFKKASELS TLCGVEIATV VFPPSKTSVY  60
SIGHPCVLSV VDKFLNPPPD TNSPQPLAKP YQNKDVTKME KLIETEEKRA FRLQSANTKG  120
SYKGLNYFQL QELCDTLEAK LKMTERVEIQ QKESGIPFSF KSYGYALAPR ENISSTSDVG  180
PSRSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-28M-type_MADS family protein