PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT34250.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YC
Protein Properties Length: 153aa    MW: 16995.6 Da    PI: 10.2731
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT34250.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC54.13.4e-17311131697
       NF-YC  16 fknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 
                  ++ +lP++r+kki+k d+d+k++ +ea  l++ + elf+  l+ +s   a e++r+t+k   +  av+r + + dfl+d  p
  PHT34250.1  31 SHQLQLPVSRLKKIMKLDQDIKKVNSEALHLIASSTELFLESLAEKSAQVALEKNRKTVKLEHLRVAVKRHQpTSDFLLDSLP 113
                 56789***************************************************************9976489*****988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    
MSTSLSRVMD TMAGEDQEGN SIAAVAIAGE SHQLQLPVSR LKKIMKLDQD IKKVNSEALH  60
LIASSTELFL ESLAEKSAQV ALEKNRKTVK LEHLRVAVKR HQPTSDFLLD SLPMPPSQPS  120
DPSPKVQSRR RLSKDKPLPS GTRRIEAFFH NCT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.12e-35NF-YC family protein