PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT34306.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CO-like

Protein Properties

Length: 468aa MW: 51541.8 Da PI: 7.1078

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT34306.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.3	5.4e-07	11	44	3	36
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36 r C+ ++++ ++l+C+ + lC C + H+ PHT34306.1 11 SRPCDFCNQEIAILYCRADTAKLCIFCDQLVHSA 44 678**************************99954 PP
2	zf-B_box	22.8	1.9e-07	54	98	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C++++++++++ C +++ lC++C H + H++ p PHT34306.1 54 SQICDNCGSEPVSIRCATDNLVLCRECDWDAHGScavsgtHDRNP 98 579*************************99994488888887766 PP
3	CCT	64.1	4.1e-22	420	463	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++ PHT34306.1 420 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAN 463 7789**************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MNSDLRSSGE SRPCDFCNQE IAILYCRADT AKLCIFCDQL VHSANALSKK HLRSQICDNC 60 GSEPVSIRCA TDNLVLCREC DWDAHGSCAV SGTHDRNPVE GFSGCPSASD LASAWGLDIE 120 AKKRPHKQPT CPWMSKDAPP PSILLQDLMV PSVNNSGIYS ITASAREVGR KQTPTCGKQK 180 QVILKQLTEL FKRDLADGVG AGAEDLVLKT PNDSSDWQGN VNVMDGSDAV MVGVAQKLEQ 240 QQPQNVPFNS LIIPHNPKDS DQVVERNILW SENSYDQNTQ IWDFNLGQLR SHEQSRSLEA 300 DYSESDMACM MKSYDELIRG TSLASSKGLG FSGINCSAAH DDMTAFSNNS NNRAASQGPA 360 TSESNNLPRI KNSSDSGYVK PKCCGVSTDL NFMDQSIVVG GENSCAETLK ADMELMAKNR 420 GNAMQRYKEK KKTRRYDKHI RYESRKARAD TRKRVKGRFV KANEAPDC

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MNSDLRSSGE SRPCDFCNQE IAILYCRADT AKLCIFCDQL VHSANALSKK HLRSQICDNC  60
GSEPVSIRCA TDNLVLCREC DWDAHGSCAV SGTHDRNPVE GFSGCPSASD LASAWGLDIE  120
AKKRPHKQPT CPWMSKDAPP PSILLQDLMV PSVNNSGIYS ITASAREVGR KQTPTCGKQK  180
QVILKQLTEL FKRDLADGVG AGAEDLVLKT PNDSSDWQGN VNVMDGSDAV MVGVAQKLEQ  240
QQPQNVPFNS LIIPHNPKDS DQVVERNILW SENSYDQNTQ IWDFNLGQLR SHEQSRSLEA  300
DYSESDMACM MKSYDELIRG TSLASSKGLG FSGINCSAAH DDMTAFSNNS NNRAASQGPA  360
TSESNNLPRI KNSSDSGYVK PKCCGVSTDL NFMDQSIVVG GENSCAETLK ADMELMAKNR  420
GNAMQRYKEK KKTRRYDKHI RYESRKARAD TRKRVKGRFV KANEAPDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	1e-96	CO-like family protein