PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT34524.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 224aa MW: 26005.5 Da PI: 6.7144

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT34524.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.3	3.6e-13	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + + G +W+++++ g+ R++k+c++rw +yl PHT34524.1 14 RGPWTIEEDHKLMNFILNNGIQCWRLVPKLAGLMRCGKSCRLRWINYL 61 89********************************************97 PP
2	Myb_DNA-binding	52.9	8.4e-17	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+ E++++++++ lG++ W++Ia++++ gRt++++k++w++ PHT34524.1 67 RGALTEAEEDIIIKLHSHLGNR-WSKIAAHFP-GRTDNEIKNHWNT 110 7889****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MGRQPCCDKI GLKRGPWTIE EDHKLMNFIL NNGIQCWRLV PKLAGLMRCG KSCRLRWINY 60 LRPDLKRGAL TEAEEDIIIK LHSHLGNRWS KIAAHFPGRT DNEIKNHWNT RIKKKLKFLG 120 IDPLTHKPIE QNDDIKQQVS VEIDENVKEL AEKTLDYPRE QQNIQNSTSS SSLNESLDMG 180 SSSEIFQNSH TLDMYNPGVE DPFQNWIGSP IHWDLFDNLE DNFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	2e-82	MYB family protein