PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT34785.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 201aa    MW: 21877.9 Da    PI: 6.7265
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT34785.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.32.3e-42381371100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ l+a+la++++
  PHT34785.1  38 PCAACKILRRRCAEKCVLAPYFPPSDPIKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGCAGSICQLQKQVSDLQAQLAKAQA 136
                 7**********************************************************************************************9997 PP

      DUF260 100 e 100
                 e
  PHT34785.1 137 E 137
                 6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MESTISSSSS RSISPSSSSS PNSPPPPASV TPVVVVSPCA ACKILRRRCA EKCVLAPYFP  60
PSDPIKFTTA HRVFGASNII KFLQELPESQ RADAVSSMVY EANARLRDPV YGCAGSICQL  120
QKQVSDLQAQ LAKAQAEVVN LQCQQANLMA LICMEMNQSP QASPPQQSLD NFINTPFHQH  180
FPMSFLDDNN NFGSVLETLW T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.16e-67LBD family protein