PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT34836.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 518aa MW: 58133.4 Da PI: 6.3166

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT34836.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.0006	76	99	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C Cgk Fs+ L H+++ H PHT34836.1 76 HICCECGKKFSSGKALGGHMSSaH 99 68******************9988 PP
2	zf-C2H2	13.7	0.00018	152	171	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 C Cgk F++k +L H+r PHT34836.1 152 ICDLCGKDFPSKKSLFGHMR 171 5******************8 PP
3	zf-C2H2	14.3	0.00012	380	402	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cgk F ++ L H ++H PHT34836.1 380 YTCNICGKIFASHQALGGHRSSH 402 9***************9999998 PP
4	zf-C2H2	15.1	6.7e-05	463	485	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k F++ L H+r+H PHT34836.1 463 HKCEICDKIFPTGQALGGHQRSH 485 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MEAQDDQENN GSSEKGPSSS SSNTFKVKIK IPIPKLVKDE EKVKVDADGD EDLCKEDENK 60 VREEKIDFFA KLKKEHICCE CGKKFSSGKA LGGHMSSAHV QANQRLEELR KWKKNFSQEK 120 SSKLMKRFDD NDEDEDDFGD GVFDNHEMMK IICDLCGKDF PSKKSLFGHM RCHPDRDWRG 180 MKPPSGSKKS AKNGGFRASF NDFDDDGDDA NDRFDVLRDE EEEERSIDVN VAALSPPPLR 240 IDLKDCVKSW GVTDRRGRSP LTKKRSVSGT CPDEEGVHLA AQQLLSLING DNNNNNHNSE 300 VICSCNSVSS APKEASLSDL KDKPKRKAVV DDTEGVHCGE TCSASPVHKK RRREKVLVKL 360 EPGKDPVPSP VIKKTPNVKY TCNICGKIFA SHQALGGHRS SHNKFKITIE NTIDHHQDQE 420 IKARNQEDIN TQGHAHQDVQ LGNQEINNCN IIDQHGSNNN NAHKCEICDK IFPTGQALGG 480 HQRSHWTNNQ EESSSQNPSK VLDFDLNELP DLDDDYYR

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MEAQDDQENN GSSEKGPSSS SSNTFKVKIK IPIPKLVKDE EKVKVDADGD EDLCKEDENK  60
VREEKIDFFA KLKKEHICCE CGKKFSSGKA LGGHMSSAHV QANQRLEELR KWKKNFSQEK  120
SSKLMKRFDD NDEDEDDFGD GVFDNHEMMK IICDLCGKDF PSKKSLFGHM RCHPDRDWRG  180
MKPPSGSKKS AKNGGFRASF NDFDDDGDDA NDRFDVLRDE EEEERSIDVN VAALSPPPLR  240
IDLKDCVKSW GVTDRRGRSP LTKKRSVSGT CPDEEGVHLA AQQLLSLING DNNNNNHNSE  300
VICSCNSVSS APKEASLSDL KDKPKRKAVV DDTEGVHCGE TCSASPVHKK RRREKVLVKL  360
EPGKDPVPSP VIKKTPNVKY TCNICGKIFA SHQALGGHRS SHNKFKITIE NTIDHHQDQE  420
IKARNQEDIN TQGHAHQDVQ LGNQEINNCN IIDQHGSNNN NAHKCEICDK IFPTGQALGG  480
HQRSHWTNNQ EESSSQNPSK VLDFDLNELP DLDDDYYR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	2e-17	C2H2 family protein