PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT34935.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

YABBY

Protein Properties

Length: 161aa MW: 18285.9 Da PI: 10.0166

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT34935.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	196.2	1.5e-60	7	152	21	170
YABBY 21 ilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeev.prvppvirP 118 + vsvP +s++++vtvrCGhC++llsvn+ q+l+ ++ l++ +++ ++ ++++ +n+k +v++++s s + +++s + + e+ pr+pp irP PHT34935.1 7 CFQVSVPCSSMLTIVTVRCGHCANLLSVNIGSLLQALPFQD-LQKLQRQQYTNVEHNNASNYKGYVSSSSS---SSKFNRFSASISPEIePRIPP-IRP 100 588**********************************99.56555554444444444455544444443...334445566666665266666.9 PP YABBY 119 PekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 PekrqrvPsayn+fikeeiqrikasnPdi+hreafs+aaknWahfP+ihfgl PHT34935.1 101 PEKRQRVPSAYNKFIKEEIQRIKASNPDITHREAFSTAAKNWAHFPHIHFGL 152 **************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence
MNAYKMCFQV SVPCSSMLTI VTVRCGHCAN LLSVNIGSLL QALPFQDLQK LQRQQYTNVE 60 HNNASNYKGY VSSSSSSSKF NRFSASISPE IEPRIPPIRP PEKRQRVPSA YNKFIKEEIQ 120 RIKASNPDIT HREAFSTAAK NWAHFPHIHF GLKLEGNMYL N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.1	2e-44	YABBY family protein