PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT35129.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 562aa MW: 63511.6 Da PI: 6.2496

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT35129.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.3	7.5e-08	441	489	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 W+t E ++lv +v ++G g+W+ I +++ +R++ ++k++w+++l PHT35129.1 441 YWSTREVLKLVGGVSEYGVGRWSDIKKMFFpssMRRSPADLKDKWRNLL 489 6*************************99999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MQNAIDPFEY NWNTSNESAM SFQQEPEQVV DAASIYFALE EEAIGVEQLL AEPEYDDIVN 60 TLLDFNTCAF SVPESYFKEF SASDTVLTKS DCGALQRSHN EGDKTKEKFL DGLSNGDDEN 120 HCFISCEDYL LDIELDEDTP TLHDVTRDIS CIESVNLENQ LADSDGRDCG VHVLTLSGAS 180 TSSDHDATIL DNFDCMSTDK LLKVFREVLG HQTPVSDNQW LKPHMIAGLE NQEISDKNFS 240 FPKRSLDSSE NQGVKVPPAS CQNLLTISTA FASIFTFRRK PRVQHVKRRG RIQWNSFKSL 300 SSVAGEIHLD CPDKWDSKES AEENVKCDGM KSGISEQYLK CKASRRGFGR RYYRRGATVT 360 SQGLGKRNIL PTEDQLIRRE GHLSKDCKAN RAHDDNIHSA EAQDDPSGTL SDQSSDDTSE 420 DDWTIGCETR GTKQDRKRNN YWSTREVLKL VGGVSEYGVG RWSDIKKMFF PSSMRRSPAD 480 LKDKWRNLLR ASCRRLPSRR GVDAKKKHRM RSIPQCVLNR VRELAVIYPH SKQRRSRISS 540 TASRASSSNV KSDNHLPVLA YE

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MQNAIDPFEY NWNTSNESAM SFQQEPEQVV DAASIYFALE EEAIGVEQLL AEPEYDDIVN  60
TLLDFNTCAF SVPESYFKEF SASDTVLTKS DCGALQRSHN EGDKTKEKFL DGLSNGDDEN  120
HCFISCEDYL LDIELDEDTP TLHDVTRDIS CIESVNLENQ LADSDGRDCG VHVLTLSGAS  180
TSSDHDATIL DNFDCMSTDK LLKVFREVLG HQTPVSDNQW LKPHMIAGLE NQEISDKNFS  240
FPKRSLDSSE NQGVKVPPAS CQNLLTISTA FASIFTFRRK PRVQHVKRRG RIQWNSFKSL  300
SSVAGEIHLD CPDKWDSKES AEENVKCDGM KSGISEQYLK CKASRRGFGR RYYRRGATVT  360
SQGLGKRNIL PTEDQLIRRE GHLSKDCKAN RAHDDNIHSA EAQDDPSGTL SDQSSDDTSE  420
DDWTIGCETR GTKQDRKRNN YWSTREVLKL VGGVSEYGVG RWSDIKKMFF PSSMRRSPAD  480
LKDKWRNLLR ASCRRLPSRR GVDAKKKHRM RSIPQCVLNR VRELAVIYPH SKQRRSRISS  540
TASRASSSNV KSDNHLPVLA YE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	494	507	RRLPSRRGVDAKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	1e-20	MYB_related family protein