PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT35177.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 825aa    MW: 91736.5 Da    PI: 6.8435
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT35177.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.81.7e-22189290199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae++       ++ +   ++l+ +d++g +W++++iyr++++r++lt+GW+ Fv +++L +gD v+F   + +++ l
  PHT35177.1 189 FCKTLTASDTSTHGGFSVPRRAAEDCfppldykEQRP--AQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVGQKNLVSGDAVLFL--RGEGGDL 283
                 99****************************8743333..348************************************************..4489999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  PHT35177.1 284 RLGIRRA 290
                 **99986 PP
2Auxin_resp119.72.3e-39315396182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +a+a+s ks+F+v+Y+Pras+++Fvv+++k++ka+++++ +G+Rfkm+f+ +ds+err+sG+v+g+sd+dp+rWpnSkWr+L
  PHT35177.1 315 VATALSAKSTFHVFYSPRASHADFVVPYQKYVKAINTRIPIGTRFKMRFDLDDSPERRYSGVVTGISDMDPFRWPNSKWRCL 396
                 6899*****************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    
MHVVMKNVTK GVVVNCSLLY TCTTTATTAT TTSSCSSIAS SSTSPVVSSI YMELWHACAG  60
PLTSLPKKGN VVVYFPQGHM EEAASATPFS PIKIDFPTFG LQPQIFCRVE DVLLLVKTSF  120
FDPLFXLNLV FNHLVKQANK ENDEVYTQLT LLPLPESVAI SLEGKDHEDS GTDEEGNGVN  180
PAKSASHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY KEQRPAQELI AKDLHGVEWK  240
FRHIYRGQPR RHLLTTGWSI FVGQKNLVSG DAVLFLRGEG GDLRLGIRRA ARPRNGLPES  300
IIKGQYSGTD VLSSVATALS AKSTFHVFYS PRASHADFVV PYQKYVKAIN TRIPIGTRFK  360
MRFDLDDSPE RRYSGVVTGI SDMDPFRWPN SKWRCLTVRW DEDIMSNHQE RVSPWEIDCS  420
VSLPPLSIQS SPRLKKLRTS PQGPSVLDSH FAGGSALLDF EESVRSSKVL QGQENLGLVS  480
PPYGCDKTVR PLDFELQRVA RHNLMPNGIE NITVGDFVKT QPPTTYSGFM ESNRFPKVLQ  540
GQEICSLRSL TGKGDVNFGA WGKPEFGCNV FGTYQRPRAN FYPLASEGSR NVFLPYNAMY  600
RAGQDPVGPS YISNFQIENP TLNQNSIQNI VRREEGGMPK FGNEQRPPEM SKVSIPENHF  660
KTENEDSLKP QASCKLFGVS LTKETSTPSS QSSGKRSCTK VHKQGSLVGR AIDLSRLNGY  720
DDLLIELERL FNMEDLLRDP NKGWRILYTD SENDMMVVGD DPWHEFCEVV SKIHIYTQEE  780
VEKMTIQGIS DDTHSCLEEA PAATMDVSKS SSIGQPDSSL TTIRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0ARF family protein