PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT35481.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 533aa MW: 59194.8 Da PI: 8.8715

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT35481.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58	2.2e-18	207	254	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +l +++q+G+++W++I++ g+ R++k+c++rw +yl PHT35481.1 207 RGQWTPEEDHKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 254 89********************************************97 PP
2	Myb_DNA-binding	45.2	2.2e-14	261	303	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++ E++ +v ++ lG++ W+ Ia+ ++ gRt++++k++w++ PHT35481.1 261 GQFSEAEEQTIVTLHSVLGNR-WSVIAAQLP-GRTDNDVKNHWNT 303 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MAVYVHNFPV NVDRARSIVG RSDAPVYVSW AFPPSGCIKI NTDGSFMPKS GLAGFGGVAR 60 DDQGRWLGGF YGRLGVVATS SLTAELWAIR GGLTLAKKYD MKKVIIETDS SDAVTLLMSV 120 GGRSVDRHPD CAVIEECRCL LSELGISVIH TLRQGNNCAD HLAKMGRKNR EELVVLHRPP 180 HSMHQLLLAD MAHVAYPRYP KHDNVKRGQW TPEEDHKLSS YIAQHGTRNW RLIPKNAGLQ 240 RCGKSCRLRW TNYLRPDLKH GQFSEAEEQT IVTLHSVLGN RWSVIAAQLP GRTDNDVKNH 300 WNTKLKKRLS GMGIDPVTHK PFSHLISEIA TTLSPPQVPH LAEAALGCFK DEMLHLLTKK 360 RIGFQFHQQF PNNAPSTSHV KNEENDTVEK IKYGLSRAIK GSDKNWETNG GATSSSFHDN 420 GGYSNYNFAK LLNDEDGSPW NQSLCSGSTC TAGGELQQQQ QQQRNKKTSN GNCEDSGKEV 480 VTTRNGSTTT MFNSDCVLWD ISSDDLMNPM VLRGSSQGER KLTETPESFK KSL

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MAVYVHNFPV NVDRARSIVG RSDAPVYVSW AFPPSGCIKI NTDGSFMPKS GLAGFGGVAR  60
DDQGRWLGGF YGRLGVVATS SLTAELWAIR GGLTLAKKYD MKKVIIETDS SDAVTLLMSV  120
GGRSVDRHPD CAVIEECRCL LSELGISVIH TLRQGNNCAD HLAKMGRKNR EELVVLHRPP  180
HSMHQLLLAD MAHVAYPRYP KHDNVKRGQW TPEEDHKLSS YIAQHGTRNW RLIPKNAGLQ  240
RCGKSCRLRW TNYLRPDLKH GQFSEAEEQT IVTLHSVLGN RWSVIAAQLP GRTDNDVKNH  300
WNTKLKKRLS GMGIDPVTHK PFSHLISEIA TTLSPPQVPH LAEAALGCFK DEMLHLLTKK  360
RIGFQFHQQF PNNAPSTSHV KNEENDTVEK IKYGLSRAIK GSDKNWETNG GATSSSFHDN  420
GGYSNYNFAK LLNDEDGSPW NQSLCSGSTC TAGGELQQQQ QQQRNKKTSN GNCEDSGKEV  480
VTTRNGSTTT MFNSDCVLWD ISSDDLMNPM VLRGSSQGER KLTETPESFK KSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56110.1	1e-104	MYB family protein