PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT35906.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 726aa    MW: 79849.4 Da    PI: 6.0326
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT35906.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.5e-204398156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +++ +++t++q++eLe++F+++++p+ ++r++L k+lgL+  qVk+WFqN+R+++k
  PHT35906.1 43 KKQYHRHTQHQIQELESFFKECPHPDDKQRKDLGKRLGLEPLQVKFWFQNKRTQMK 98
                688999***********************************************998 PP
2START214.15.1e-672374591206
                 HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
       START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                 ela +a++el+++a+ +ep+W +ss        +n++e+ ++f+++ +     +++ea+r+s+vv+m+ ++lve+l+d++ qW++ ++    ka++lev
  PHT35906.1 237 ELAVAAMEELIRLAQTGEPLWIQSSennpheVLLNEEEYARTFPRGIGpkslgFKSEASRESAVVIMNYVNLVEILMDVN-QWTNFFTgivsKATILEV 334
                 57899********************88888777899999999999888********************************.****************** PP

                 ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
       START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                 +s+g      galq+m+ae+q+++plvp R+ +fvRy++q+ +g w++vdvS+d+ ++ +    v R++++pSg++i++++ng+skvtw+ehv++++r 
  PHT35906.1 335 LSTGvagnynGALQVMTAEFQVPTPLVPtRENYFVRYCKQHADGAWAVVDVSLDNLRSTS----VSRCRRRPSGCIIQELPNGYSKVTWIEHVEVDDRA 429
                 *********************************************************975....8********************************** PP

                 XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 177 phwllrslvksglaegaktwvatlqrqcek 206
                 +h+++r+lv sgla+gak+wvatl+r ce+
  PHT35906.1 430 VHSIYRPLVDSGLAFGAKRWVATLERICER 459
                 ****************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    
MTRKTPENEL DLIRDDEFES KSGTDIMEAP SGDDQDPNKR PKKKQYHRHT QHQIQELESF  60
FKECPHPDDK QRKDLGKRLG LEPLQVKFWF QNKRTQMKSQ HERHENTQLR NENEKLRAEN  120
IRYKEALTTA TCPNCGGPAT IGEMSFDEQH LRIENARLRE EIDRISGIAA KYVGKPMLNY  180
PQLPSLGPPT RSPLDHGITA ANLGHQLGEM FTTSTSAGDL LRSISGPTDA DKPIIIELAV  240
AAMEELIRLA QTGEPLWIQS SENNPHEVLL NEEEYARTFP RGIGPKSLGF KSEASRESAV  300
VIMNYVNLVE ILMDVNQWTN FFTGIVSKAT ILEVLSTGVA GNYNGALQVM TAEFQVPTPL  360
VPTRENYFVR YCKQHADGAW AVVDVSLDNL RSTSVSRCRR RPSGCIIQEL PNGYSKVTWI  420
EHVEVDDRAV HSIYRPLVDS GLAFGAKRWV ATLERICERL ASVMASNIPT GDVITSPEGR  480
KSMLKLAERM VMSFCAGVGA STAHTWTTLS GSGADDVRVM TRKSIDDPGR PPGIVLSAAT  540
SFWLPVPTKR IFDFLRDENS RNEASKFTNF SCLWDILSNG GLVQEMAHIA NGRDSGNGVS  600
LLRVNSGNST QNNMLILQES CLDSTGCYVI YAPVDIAAMN VVLSGGDPDY VALLPSGFAI  660
LPDGSSNASS AENTNVAGGS LLTVAFQILV DSVPTAKLSL GSVATVNSLI KCTVERIKAA  720
IQGENA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein