PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT36172.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Whirly
Protein Properties Length: 240aa    MW: 26761.8 Da    PI: 10.4303
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT36172.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly200.91.6e-62642021139
      Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePl 99 
                 sv+k+kaal+ ++++ptf+++dsg +kl+r+G ++l++ ++++erkydWek+q falsatev++l+++++++sceffhdp++++sn+G+vrk+l+++  
  PHT36172.1  64 SVFKGKAALSAEPRLPTFNKMDSGVVKLNRRGVIMLTFWPSIGERKYDWEKRQLFALSATEVGSLISMGTRDSCEFFHDPSMQSSNAGQVRKSLSIKSN 162
                 79************************************************************************************************* PP

      Whirly 100 pdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                 +dG+G+fv+lsv n+ +k+n++f+vPv+ aefav+r++++
  PHT36172.1 163 ADGTGYFVSLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFS 202
                 *************************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MTMSKLTRLL HPRNQLLLNK LPVEGVKDSI WQHAINTFAG FSSVRQYGAA DAGKLAGRVF  60
APYSVFKGKA ALSAEPRLPT FNKMDSGVVK LNRRGVIMLT FWPSIGERKY DWEKRQLFAL  120
SATEVGSLIS MGTRDSCEFF HDPSMQSSNA GQVRKSLSIK SNADGTGYFV SLSVVNNNLK  180
TNDRFTVPVT TAEFAVMRTA FSFALPHIMG WDRFTNRPSE CISQSPAKVV PQLTEVEWCR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-94Whirly family protein