PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT36211.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 336aa    MW: 38510.3 Da    PI: 8.4228
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT36211.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-0884130347
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE + + da +++ ++   +W  +a++++ g+t  ++   ++ +
       PHT36211.1  84 KWTPEENKMFEDALALFDKEtpdRWYNVASMIP-GKTVDDVMKQYREL 130
                      8*****************99*************.*******9999977 PP
2Myb_DNA-binding45.91.3e-14198242347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
       PHT36211.1 198 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 242
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MLLSKKSYSD SSQLLLDAIK NKPRFSSFLP RNITRLGCPS PLASVANFVN EQENMNSEME  60
LFSPPLATYL RNSNCLFEEN KGTKWTPEEN KMFEDALALF DKETPDRWYN VASMIPGKTV  120
DDVMKQYREL LEDITDIEAG LIPIPGYTTS SNSFTLEWIN QDHEEGIFHD FNKRFYGSSG  180
KRSTSNRYSE HERKKGVPWT EEEHRQFLLG LKKYGKGDWR NISRNFVTTR TPTQVASHAQ  240
KYFIRQLSGG KDKRRSSIHD ITTVNLTEMK SPSPQNHISS SSPDKSVPSP QKALCEYNFP  300
NQEAVIGFKT YGLKLHEHGM HSVILQGLQF GQYNTM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-108MYB family protein