PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT36353.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 239aa MW: 27309 Da PI: 8.815

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT36353.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.7	7.5e-15	23	66	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +g+WT+eEd ll ++++ +G g W++++ + g++R++k+c++rw PHT36353.1 23 KGAWTEEEDFLLRKCIQNYGEGKWHLVPIRAGLNRCRKSCRLRW 66 79****************************************** PP
2	Myb_DNA-binding	26.6	1.4e-08	65	89	23	48
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia +++ gRt++++k++w+++l PHT36353.1 65 RWSLIAGRLP-GRTANDVKNYWNSHL 89 4*******.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MFDGALKNIM NTAIIANSSG VRKGAWTEEE DFLLRKCIQN YGEGKWHLVP IRAGLNRCRK 60 SCRLRWSLIA GRLPGRTAND VKNYWNSHLQ KKLITAPHRQ ERKYNTALKI TKKSILRPRP 120 RTFSSSAKNN ISWCTNKSTV ITNTLDKDER DKEIGLNICQ KLTSETSSTI DDGVQWWTSL 180 LENCKEIEED VAAVGIFEEK NKLVPSLLHD EINSLTMQQG QSDGWDDFSA DIDLWNLLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56650.1	3e-40	MYB family protein