PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT36356.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 258aa MW: 29564.7 Da PI: 9.1795

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT36356.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd ll ++++++G g W++++++ g++R++k+c++rw++yl PHT36356.1 15 KGAWNEEEDFLLRKCIEKYGEGKWHLVPARAGLNRCRKSCRLRWLNYL 62 79********************************************97 PP
2	Myb_DNA-binding	28.5	3.5e-09	68	136	1	46
TSSS-HHHHHHHHHHHHHTTTT........................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg........................tWktIartmgkgRtlkqcksrwqk 46 rg + ++E +l+++++k+lG++ ++I+ +++ gRt++++k++w++ PHT36356.1 68 RGDFDPDEVDLILRLHKLLGNRqfyvldspkfagsshlkvndirdlERSLISGRLP-GRTANDVKNFWNT 136 78999*************************************************.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MNTPIICTTS LQVRKGAWNE EEDFLLRKCI EKYGEGKWHL VPARAGLNRC RKSCRLRWLN 60 YLRPHIKRGD FDPDEVDLIL RLHKLLGNRQ FYVLDSPKFA GSSHLKVNDI RDLERSLISG 120 RLPGRTANDV KNFWNTRLLR KAHIAPINNK IGDNINTKNE IIRPQPRNFS STMKNVSWCN 180 NKSIINEANI LENCNEIEEA IATGTRTPLC KNISSKKNCN EIDKTPCFLN GGGNAMQQGQ 240 SDGGWDEFSM DDIWNLLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	5e-53	MYB family protein