PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT36684.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 203aa MW: 23531.1 Da PI: 6.3604

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT36684.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.4	4.3e-15	8	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W +eEde+l+ v+ G ++W++ a+ g++R++k+c++rw++yl PHT36684.1 8 RGQWLEEEDERLAMIVAISGERRWDALAKDSGLKRSGKSCRLRWLNYL 55 899*******************************************97 PP
2	Myb_DNA-binding	45.3	2e-14	64	106	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l++++ kq+G++ W++Ia+ ++ gRt++++k+ w+++l PHT36684.1 64 ITADEERLIIRLQKQFGNK-WSKIAKQLP-GRTDNEIKNSWRSHL 106 59***************.*****.*********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence
MQEEELRRGQ WLEEEDERLA MIVAISGERR WDALAKDSGL KRSGKSCRLR WLNYLRPNLK 60 HGHITADEER LIIRLQKQFG NKWSKIAKQL PGRTDNEIKN SWRSHLRKKA PVYEQECFED 120 NTSNSEQKSS ISNRATVLNS SNSDDSFSEK GDCYSADSLA NEGTLLDGIP SWSYEQSRME 180 HHMYFCSSNL CSCYAPWTSE DNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	1e-50	MYB family protein