PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT36712.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 415aa MW: 47895.6 Da PI: 7.9097

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT36712.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90.3	2.1e-28	116	201	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e g++rs k+C+ek+enl k+ykk+k+g+ +r ++ ++++yf+qlea PHT36712.1 116 RWPRQETLTLLEVRSQLDCKFKEANQKGPLWDEVSRIMsEEYGYQRSGKKCREKFENLYKYYKKTKDGKAGR--QDGKHYRYFRQLEA 201 8***********************************8889************************98..55667*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MEDHHYGMMD LTQYMNGRSL FASVQPHLTP DLLFGQHQHF ETMVMASSAM APQHDNCLPH 60 QHHHHHEFHP DSSTGAAATT RTSVSGGGGG VCALSALEME GVGVGGVHGG DGGNGRWPRQ 120 ETLTLLEVRS QLDCKFKEAN QKGPLWDEVS RIMSEEYGYQ RSGKKCREKF ENLYKYYKKT 180 KDGKAGRQDG KHYRYFRQLE ALYGKTGSTI DSSTFLHYNQ EAHQGPKLSD SLYDSSDSDA 240 TNLSDVENDS REKRKNKKRG KRSWKAKVRD FMDIQMRKLV EKQEFLLEKM MKTIEDKEKE 300 RILREEEWRK QEAIRVEKQQ KFWANERAWI EARDAALIDA LHKLNGEEIM KSTTTNYNLN 360 DKNASMFYCN KKQKDMNSLS SSCYYNFQIK NEGRSYCETS RHVPNVHETM DDGLF

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MEDHHYGMMD LTQYMNGRSL FASVQPHLTP DLLFGQHQHF ETMVMASSAM APQHDNCLPH  60
QHHHHHEFHP DSSTGAAATT RTSVSGGGGG VCALSALEME GVGVGGVHGG DGGNGRWPRQ  120
ETLTLLEVRS QLDCKFKEAN QKGPLWDEVS RIMSEEYGYQ RSGKKCREKF ENLYKYYKKT  180
KDGKAGRQDG KHYRYFRQLE ALYGKTGSTI DSSTFLHYNQ EAHQGPKLSD SLYDSSDSDA  240
TNLSDVENDS REKRKNKKRG KRSWKAKVRD FMDIQMRKLV EKQEFLLEKM MKTIEDKEKE  300
RILREEEWRK QEAIRVEKQQ KFWANERAWI EARDAALIDA LHKLNGEEIM KSTTTNYNLN  360
DKNASMFYCN KKQKDMNSLS SSCYYNFQIK NEGRSYCETS RHVPNVHETM DDGLF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	254	262	RKNKKRGKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	3e-79	Trihelix family protein