PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT36886.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Nin-like
Protein Properties Length: 362aa    MW: 41210.4 Da    PI: 6.7833
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT36886.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK68.51e-21271320352
      RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  +++l+d + y +lpi+ AAk+L++c+Tv+K+ CR+ G++RWP+Rki+s+
  PHT36886.1 271 GKLRLKDFAGYLHLPIEIAAKKLNICPTVMKKVCRRDGLSRWPYRKINSI 320
                 68999*******************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MERALHDPFR RRRRLVLAKR RRGHLRKMDN PTAIVPYHDP FDDDSSLVQI SLFDDENPII  60
DGPWDNEPFS LFHENPPILI SDIGVSNTDP ILLQCSNYLV GNSTTNTEGG VPGTNYCSTS  120
HNCQILREIT HSDGLQISKL DIYGTLGKIS HAVLEKYTMD FSSQTHKSSQ IFDFSNDSTN  180
SVKQFLVHYF EACKSEGYIV LLDPLCNFYE ALGVGSDGGD CFDIDSLLQL SPTTSRDFKM  240
DQQEKRNESE YNNSDVRHEK ISLSAQRERT GKLRLKDFAG YLHLPIEIAA KKLNICPTVM  300
KKVCRRDGLS RWPYRKINSI QRKISLREKC LSSNHVEERA SAKAAIAKLE QELDNIFEAF  360
SN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314RALHDPFRRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.16e-11Nin-like family protein