PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT37119.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 216aa MW: 23989.6 Da PI: 8.7231

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT37119.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.2	1.4e-25	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien s r vtfskRr g++KKAeELS+LCdae+ vi+fs+t+kly ++s PHT37119.1 9 KKIENISCRRVTFSKRRSGLFKKAEELSILCDAEIGVIVFSNTDKLYKFAS 59 68***********************************************86 PP
2	K-box	54.2	6.2e-19	83	160	12	89
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 ++ + e++ Lk+e+ L++ +++G++L+ L +keLqqLe+qL +++ +i++kK+++lle ++++ ++ +el + PHT37119.1 83 VQNVAQSLEVNALKDEVARLRQVTGRMMGKELDGLGFKELQQLEHQLTEGILSIKNKKEQVLLELLQKSNMQIEELGK 160 444556789*******************************************************99999998888765 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MGRGKIEMKK IENISCRRVT FSKRRSGLFK KAEELSILCD AEIGVIVFSN TDKLYKFASS 60 NSSMEKIMDR YTGCPASSDH TSVQNVAQSL EVNALKDEVA RLRQVTGRMM GKELDGLGFK 120 ELQQLEHQLT EGILSIKNKK EQVLLELLQK SNMQIEELGK KSSGGSSTVI CDYKSVREEI 180 SDTSLSLGLS VATSQQKKIP KIECTSNDSG KLMILD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	9e-38	MIKC_MADS family protein