PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT37187.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 375aa MW: 43234.2 Da PI: 8.394

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT37187.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19	3.7e-06	67	88	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg sF + +Lk+H+++H PHT37187.1 67 VCEECGVSFQKPAHLKQHMQSH 88 6*******************99 PP
2	zf-C2H2	17.2	1.5e-05	94	118	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + C+ dC s++rk++L+rH+ +H PHT37187.1 94 FMCHvdDCQSSYRRKDHLTRHLLLH 118 89********************998 PP
3	zf-C2H2	14.2	0.00013	123	148	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp C+ +Fs + n++rH + H PHT37187.1 123 FECPvgGCKSTFSFQGNMTRHVKEmH 148 89********************9988 PP
4	zf-C2H2	19.8	2.1e-06	162	186	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk+F+ s L++H +H PHT37187.1 162 YVCSeaGCGKVFKYASKLRKHEDSH 186 99*******************9888 PP
5	zf-C2H2	20.7	1.1e-06	253	277	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ dC +Fs++snL +Hi++ H PHT37187.1 253 KCEfqDCQHTFSTRSNLAQHIKSvH 277 79999*****************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MGEEGEEQRK IVFKDIRRYY CEFCGLCRSK KSLISSHIQS HHKGEIENRR EEGTEDAKGK 60 EGSKRNVCEE CGVSFQKPAH LKQHMQSHSI ERPFMCHVDD CQSSYRRKDH LTRHLLLHQG 120 KLFECPVGGC KSTFSFQGNM TRHVKEMHDQ SASPKVDLPK EYVCSEAGCG KVFKYASKLR 180 KHEDSHVKLE SIEALCLEPG CMKHFTNEKC LKEHIESCHQ HIVCEICGTK QLKKNIKRHL 240 RTHEEGPISE RIKCEFQDCQ HTFSTRSNLA QHIKSVHLGA KPFSCSISGC GMKFAFKHVR 300 DKHEKSGCHV YTPGDFEEAD ELFLSRPRGG RKREPTLFES IMRKRITPPS GTDPVFNQNP 360 EYLSWLRSVE SDNQM

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MGEEGEEQRK IVFKDIRRYY CEFCGLCRSK KSLISSHIQS HHKGEIENRR EEGTEDAKGK  60
EGSKRNVCEE CGVSFQKPAH LKQHMQSHSI ERPFMCHVDD CQSSYRRKDH LTRHLLLHQG  120
KLFECPVGGC KSTFSFQGNM TRHVKEMHDQ SASPKVDLPK EYVCSEAGCG KVFKYASKLR  180
KHEDSHVKLE SIEALCLEPG CMKHFTNEKC LKEHIESCHQ HIVCEICGTK QLKKNIKRHL  240
RTHEEGPISE RIKCEFQDCQ HTFSTRSNLA QHIKSVHLGA KPFSCSISGC GMKFAFKHVR  300
DKHEKSGCHV YTPGDFEEAD ELFLSRPRGG RKREPTLFES IMRKRITPPS GTDPVFNQNP  360
EYLSWLRSVE SDNQM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-141	C2H2 family protein