PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT37492.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 541aa MW: 62231 Da PI: 7.3182

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT37492.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91.1	1.2e-28	114	199	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g+ r+ k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea PHT37492.1 114 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYLRTGKKCREKFENLYKYYKKTKEGKAGR--QDGRHYRFFRQLEA 199 8***********************************999*************************97..56667*****85 PP
2	trihelix	55	2.2e-17	404	483	2	73
trihelix 2 WtkqevlaLiearremeerlrr........gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 W ++e+ Li++r++me+r+++ + + lWee+s+km+ g+ +s+++Ck+kw+++n + k+++ +k+++s PHT37492.1 404 WLESEITRLIQLRTSMESRFQElgissrddQDDEHVLWEEISAKMAILGYDKSATMCKNKWSSINSYLMKCNKKRKDQNS 483 *******************854433322358999***********************************9998633 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MEDQYGMADL RQYMNGRRPI FGSIQQVPPE LLPVTAHQQR HRNLGPGQYD MVMGMAHGLT 60 TGTTTNHHQH HHQHEFLTDS SPVAATGTTT TSAGFSGMDQ METGGGGGGD GSGRWPRQET 120 LTLLEIRSRL DSKFKEANQK GPLWDEVSRI MSEEHGYLRT GKKCREKFEN LYKYYKKTKE 180 GKAGRQDGRH YRFFRQLEAL YGETSNNISS SASDALHQGS HFPYNRVSNI NQEPHNFHHH 240 NQAPKISDSL SLSNSSEFNT SSSDDSDQDK MSKKRRPGKR SLKAKIKDFI DGQMRKLMEK 300 QEAWLEKMMK MIEHKEQERI LREEEWRNQE TIRMEKEQRF WANERAWIEA RDAALMEAVH 360 KLSTGKDLRS TSSSNPRHAE DMVETLGQND KSDDVTHGLK DDNWLESEIT RLIQLRTSME 420 SRFQELGISS RDDQDDEHVL WEEISAKMAI LGYDKSATMC KNKWSSINSY LMKCNKKRKD 480 QNSTSLLCYN SNVQINNQYY EADGSSSSFR YLMGDNHHHN QNLWENYELK LSKGGDGGGN 540 N

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MEDQYGMADL RQYMNGRRPI FGSIQQVPPE LLPVTAHQQR HRNLGPGQYD MVMGMAHGLT  60
TGTTTNHHQH HHQHEFLTDS SPVAATGTTT TSAGFSGMDQ METGGGGGGD GSGRWPRQET  120
LTLLEIRSRL DSKFKEANQK GPLWDEVSRI MSEEHGYLRT GKKCREKFEN LYKYYKKTKE  180
GKAGRQDGRH YRFFRQLEAL YGETSNNISS SASDALHQGS HFPYNRVSNI NQEPHNFHHH  240
NQAPKISDSL SLSNSSEFNT SSSDDSDQDK MSKKRRPGKR SLKAKIKDFI DGQMRKLMEK  300
QEAWLEKMMK MIEHKEQERI LREEEWRNQE TIRMEKEQRF WANERAWIEA RDAALMEAVH  360
KLSTGKDLRS TSSSNPRHAE DMVETLGQND KSDDVTHGLK DDNWLESEIT RLIQLRTSME  420
SRFQELGISS RDDQDDEHVL WEEISAKMAI LGYDKSATMC KNKWSSINSY LMKCNKKRKD  480
QNSTSLLCYN SNVQINNQYY EADGSSSSFR YLMGDNHHHN QNLWENYELK LSKGGDGGGN  540
N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	273	300	KKRRPGKRSLKAKIKDFIDGQMRKLMEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-114	Trihelix family protein