PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT37643.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 224aa MW: 25567.2 Da PI: 10.1127

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT37643.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.2e-17	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd+ l++av + g++Wk+Ia+ ++ R++ qc +rwqk+l PHT37643.1 59 RGGWTPEEDDTLKKAVSVYRGKCWKKIAELFP-DRSEVQCLHRWQKVL 105 789***************************.**********986 PP
2	Myb_DNA-binding	59.2	9.2e-19	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++++++v+++G+ W+ Ia+ ++ gR +kqc++rw+++l PHT37643.1 111 KGPWTREEDDKIIELVAKYGPIKWSVIAKSLP-GRIGKQCRERWHNHL 157 79****************99******.***********97 PP
3	Myb_DNA-binding	51.4	2.6e-16	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE+ l+da++ +G++ W+ Ia+ ++ gR ++ +k++w++ PHT37643.1 163 KDAWTLEEERALIDAHRIHGNK-WAEIAKVLP-GRADNGIKNHWNS 206 689*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MDELQVEECC IENKQSVAAS SSSVSENSGS VTLRSPAVSS PTPASPTHRR TTGPIRRARG 60 GWTPEEDDTL KKAVSVYRGK CWKKIAELFP DRSEVQCLHR WQKVLNPELV KGPWTREEDD 120 KIIELVAKYG PIKWSVIAKS LPGRIGKQCR ERWHNHLNPN IKKDAWTLEE ERALIDAHRI 180 HGNKWAEIAK VLPGRADNGI KNHWNSSLRK KLRLLFSYWK SSIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-100	MYB family protein