PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT37838.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 245aa MW: 28426.9 Da PI: 8.3663

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT37838.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.2	7.7e-20	70	122	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++++qle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k PHT37838.1 70 KKRLSSDQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 122 55699***********************************************9 PP
2	HD-ZIP_I/II	120.1	1.1e-38	69	160	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kk+rls++q+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+ yd +++e+++L++ev +Lr+ lke PHT37838.1 69 KKKRLSSDQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKAKQLERLYDSLKQDYDVVSREKQKLQDEVLALRAILKE 160 9**************************************************************************************88875 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MDWNGNIRPF VSRPILDNSL NFLYSYNYDQ YPGMEMKHAM QTQHGGVPLP TMDNNNNNNF 60 VFNQHQLDKK KRLSSDQLES LENSFQEEIK LDPDRKMKLA KELGLQPRQI AVWFQNRRAR 120 WKAKQLERLY DSLKQDYDVV SREKQKLQDE VLALRAILKE QATKKQVNST VYTEISGEET 180 VESTSMPSSN KTITRAITTS SHQNNNIINN NNNNSNMAEC SYVYNVVDGL NPVMPPYWAS 240 LPTYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	98	KKKRLSSDQLESLENSFQEEIKLDPDRKMK
2	117	125	RRARWKAKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	2e-54	HD-ZIP family protein