PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT37969.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 356aa MW: 38791 Da PI: 4.961

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT37969.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.3	1.5e-17	43	88	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v +G ++W++Iar ++ gR++k+c++rw + PHT37969.1 43 KGPWSPEEDAILSRLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 88 79****************************.*********985 PP
2	Myb_DNA-binding	56.5	6.3e-18	95	139	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T +Ed ++++a++ +G++ W++Iar ++ gRt++ +k++w++ PHT37969.1 95 RKPFTDDEDRIILQAHAIHGNK-WASIARLLP-GRTDNAIKNHWNST 139 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MENDTAEVQE VTVAVNGFYG GGDDEEVLIT EDGSGKKNAD RVKGPWSPEE DAILSRLVSN 60 FGARNWSLIA RGIPGRSGKS CRLRWCNQLD PAVKRKPFTD DEDRIILQAH AIHGNKWASI 120 ARLLPGRTDN AIKNHWNSTL RRRCAELGRL RSDSSNVMED VSVEKSKASS EETQSCGDVN 180 SLKAIEGKDV SSEENQEDNL YEDKSQGDVQ QSDAANDPHT LFRPVARVSA FSAYGSLNVP 240 ESQLQTPRLI PVQAPDLGIS KLLEGAFTDR LVPHQCGHGC CGNASQEING SSLLGPEFVD 300 YDEPPSFSSH ELATLATEIS NVAWCKSGLK NSSIEVIFNP TTRAVCGASH LPSRPF

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MENDTAEVQE VTVAVNGFYG GGDDEEVLIT EDGSGKKNAD RVKGPWSPEE DAILSRLVSN  60
FGARNWSLIA RGIPGRSGKS CRLRWCNQLD PAVKRKPFTD DEDRIILQAH AIHGNKWASI  120
ARLLPGRTDN AIKNHWNSTL RRRCAELGRL RSDSSNVMED VSVEKSKASS EETQSCGDVN  180
SLKAIEGKDV SSEENQEDNL YEDKSQGDVQ QSDAANDPHT LFRPVARVSA FSAYGSLNVP  240
ESQLQTPRLI PVQAPDLGIS KLLEGAFTDR LVPHQCGHGC CGNASQEING SSLLGPEFVD  300
YDEPPSFSSH ELATLATEIS NVAWCKSGLK NSSIEVIFNP TTRAVCGASH LPSRPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-94	MYB family protein