PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT38200.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 242aa    MW: 27026.8 Da    PI: 5.7555
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT38200.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.62.5e-3971071100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC k+C++apyf+ eq + +fa++hk+FGasnv+kll+++p ++r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+lk
  PHT38200.1   7 PCGACKFLRRKCIKGCIFAPYFCYEQgATHFAAIHKVFGASNVSKLLAHIPVSDRGEAAVTIAYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLK 105
                 7*************************89********************************************************************999 PP

      DUF260  99 ee 100
                 e+
  PHT38200.1 106 EQ 107
                 87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MTGTGSPCGA CKFLRRKCIK GCIFAPYFCY EQGATHFAAI HKVFGASNVS KLLAHIPVSD  60
RGEAAVTIAY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LASLKEQAAA QNLQNGSNYA  120
NPNYDKFQDV QSWFHQSENP STMPQFDHSS LTSNNNIGSS TQYYGSENNY IMTSSNYHMG  180
SNYENINLVI PKENMSSFEE GGSCSVDSSF DMQTDHYNNR QWTFQDDADD LQSVAFRYLQ  240
HT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.18e-57LBD family protein