PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT38521.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 533aa MW: 58591.3 Da PI: 8.8271

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT38521.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PHT38521.1 82 FVCEICNKGFQRDQNLQLHRRGH 104 89*******************88 PP
2	zf-C2H2	15.5	4.9e-05	158	180	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ PHT38521.1 158 WKCDKCSKKYAVQSDWKAHQKTC 180 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MSNISGEEAG SFTSGEEVNL HISNNNISSI TTSNGSNSLS QQQQNKQQQP LVKKKRNLPG 60 NPDPNAEVVA LSPTTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRTTTEVRK 120 RVYICPEPTC VHHNPARALG DLTGIKKHYS RKHGEKKWKC DKCSKKYAVQ SDWKAHQKTC 180 GTREYKCDCG TIFSRRDSFI THRAFCDALA EENNKVNQGL MNSMEANIHS GQMHELMSSN 240 ASLGLSEFNN FDPKNPLKTL PQELLPIPFK SMNNSMSPGG MFSTTSGNLF GSPRSVASSS 300 SGLQLGSNIP SNFNYLQDNG KNGVAQGQGQ FSGSSAPMSA TALLQKAAQM GATASSSINS 360 PMMQKSFVTS SMAGPDTITR PSPYENFQMQ QDNSNHHPHQ QQPNLAAVMN DMGIYSGILM 420 NNDQNNGGFI KNVTELDREN NSTNDNSSHV MGIRNQTVLG QNGNDMLTVD FLGVGGTSRP 480 QISNLQEQQR LEEAINQQRM QAAAAAASMN PFHHQQSINS QGNSALEKPI WDV

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MSNISGEEAG SFTSGEEVNL HISNNNISSI TTSNGSNSLS QQQQNKQQQP LVKKKRNLPG  60
NPDPNAEVVA LSPTTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRTTTEVRK  120
RVYICPEPTC VHHNPARALG DLTGIKKHYS RKHGEKKWKC DKCSKKYAVQ SDWKAHQKTC  180
GTREYKCDCG TIFSRRDSFI THRAFCDALA EENNKVNQGL MNSMEANIHS GQMHELMSSN  240
ASLGLSEFNN FDPKNPLKTL PQELLPIPFK SMNNSMSPGG MFSTTSGNLF GSPRSVASSS  300
SGLQLGSNIP SNFNYLQDNG KNGVAQGQGQ FSGSSAPMSA TALLQKAAQM GATASSSINS  360
PMMQKSFVTS SMAGPDTITR PSPYENFQMQ QDNSNHHPHQ QQPNLAAVMN DMGIYSGILM  420
NNDQNNGGFI KNVTELDREN NSTNDNSSHV MGIRNQTVLG QNGNDMLTVD FLGVGGTSRP  480
QISNLQEQQR LEEAINQQRM QAAAAAASMN PFHHQQSINS QGNSALEKPI WDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-102	C2H2 family protein