PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT38527.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 276aa    MW: 30385.2 Da    PI: 8.6414
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT38527.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.91.6e-19193227135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg+ +Tp+WR gp g+ktLCnaCG++y++ +l
  PHT38527.1 193 CQHCGADQTPQWRAGPLGPKTLCNACGVRYKSGRL 227
                 *******************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MDALDPTSAA CFMVDDDLLN FSLEDDEDDE KSTTTSKNNP TSYSSQSSNN PLVDNLLPLN  60
HPECVEEELE WLSNKDAFPA IEFGILSDNP GMVFDHHSPV SVLENSSSTS HSSGNGVASG  120
NAYMSCSANL KVPVNYPVRA RSKRRRRRRR GGFADMPSER CLPVKQASFK NVKKREPLLS  180
LPRKSAANIG RKCQHCGADQ TPQWRAGPLG PKTLCNACGV RYKSGRLLPE YRPANSPTFS  240
PSVHSNSHRK VLEMRKHKIG VGGMLIHEAC GYRVGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141150RSKRRRRRRR
2143148KRRRRR
3143149KRRRRRR
4144150KRRRRRR
5144149RRRRRR
6144150RRRRRRR
7145150RRRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-39GATA family protein