PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT38572.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 154aa    MW: 17939.1 Da    PI: 9.6743
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT38572.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-0819442046
                     TTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqk 46
                     G  +W+ Ia+++  +Rt++++k++w++
       PHT38572.1 19 GYQRWSVIASKLS-TRTDNDVKNHWNS 44
                     4458*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    
MRLTLRRIVR TAEFSKRKGY QRWSVIASKL STRTDNDVKN HWNSKLKKKF LAIKANSDND  60
SKQVFNSSKQ EVYSLMKFPF QFSSWDSTDN NSKNMIQNDK MYPRFIEDQS TEGGSMPSSS  120
LDDVGWFESY FPMNSNTDEI MGSNDIIDFP PIFT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.12e-10MYB family protein