PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT39062.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 659aa MW: 75537.2 Da PI: 5.7393

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT39062.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	56.3	6.4e-18	217	263	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++sledl+++F ++ ++AA +L+v+ ++ KriCR++GI+RWP+ kik PHT39062.1 217 SVSLEDLKEQFGKKREEAAESLNVSISTFKRICREHGISRWPSSKIK 263 689*******************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence
MELEISSNMV VNPSISSPDS TFWQIQQVWE PDDMLYFDYS LLPPSPMEDF TLWNHSWSPP 60 LPPPPHRQES ARMKRAEFKA HFGRLAYEAF GKVMEELIRK VVKEEIKRFR RRCLEKPVKQ 120 QNIIGVRFEE KAYTAGTSQC MQFNAKCSAE ESPRHIVPSW GDCALPVSFQ QRSITEHVNL 180 KRKVDTGPSG QDLTIFELGN KQKMNKKYKK TWRIGDSVSL EDLKEQFGKK REEAAESLNV 240 SISTFKRICR EHGISRWPSS KIKRERLLLS SLSCNGTDRV ATNTQMRITK GLTSLASTFS 300 VKSNQQKSWS SNLSVNDENG TSSNGNLLEK NENSDRENIM IQVEDSANQE LVYIPQEFWP 360 ACDSLIPDVP TILSRLPRER MPAEDATQLI SSAPGQQGER IARQIDMTSE ISQLEKQHLG 420 EEWFKCDLSV EDSSSYDSRN VSEPIQGHAI VDSTHMEVQP LLESVSTQPF NSFSCHENTA 480 ENTKLLFYNL IMSTLEDLID PENETSMTKA LPILADNLSL FSEEQAEQIL ELSVYFPTLV 540 HSWREFSRSQ TYNQKSLAEM GKIRYLAETS VKDEESLSIR YEELERKEQE LMAQLEAVQK 600 EKARIAEQRS EKSKQTKHLV SLAEEKAASS TKEKHMMKIA TTKLNNLVDQ WTKIQSFFT

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence

MELEISSNMV VNPSISSPDS TFWQIQQVWE PDDMLYFDYS LLPPSPMEDF TLWNHSWSPP  60
LPPPPHRQES ARMKRAEFKA HFGRLAYEAF GKVMEELIRK VVKEEIKRFR RRCLEKPVKQ  120
QNIIGVRFEE KAYTAGTSQC MQFNAKCSAE ESPRHIVPSW GDCALPVSFQ QRSITEHVNL  180
KRKVDTGPSG QDLTIFELGN KQKMNKKYKK TWRIGDSVSL EDLKEQFGKK REEAAESLNV  240
SISTFKRICR EHGISRWPSS KIKRERLLLS SLSCNGTDRV ATNTQMRITK GLTSLASTFS  300
VKSNQQKSWS SNLSVNDENG TSSNGNLLEK NENSDRENIM IQVEDSANQE LVYIPQEFWP  360
ACDSLIPDVP TILSRLPRER MPAEDATQLI SSAPGQQGER IARQIDMTSE ISQLEKQHLG  420
EEWFKCDLSV EDSSSYDSRN VSEPIQGHAI VDSTHMEVQP LLESVSTQPF NSFSCHENTA  480
ENTKLLFYNL IMSTLEDLID PENETSMTKA LPILADNLSL FSEEQAEQIL ELSVYFPTLV  540
HSWREFSRSQ TYNQKSLAEM GKIRYLAETS VKDEESLSIR YEELERKEQE LMAQLEAVQK  600
EKARIAEQRS EKSKQTKHLV SLAEEKAASS TKEKHMMKIA TTKLNNLVDQ WTKIQSFFT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	9e-14	Nin-like family protein