PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT39578.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARF

Protein Properties

Length: 610aa MW: 68857.7 Da PI: 6.6162

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT39578.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.4	1.4e-23	125	225	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f kvlt sd++++g +++ +k+a+e+ + +++ ++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv++++L +gD++vF +++++e ++ PHT39578.1 125 FYKVLTASDTSTHGGFSIFRKHANEClppldMTQPTPAQELVAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDSFVFL--RSEKGEVRI 221 789*************************9666666779**********************************************..458999999 PP EEE- CS B3 95 kvfr 98 +++r PHT39578.1 222 GIRR 225 9998 PP
2	Auxin_resp	98.4	1e-32	251	330	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++ v+Y+Pr+ s+F+v ++k+++a+++++svGmRfkm+fe+e+++e r++Gt+vgv+d ++++W++S+WrsLk PHT39578.1 251 ASHAVATQTMLVVYYKPRT--SQFIVGLNKYLEAVNHRYSVGMRFKMHFEGEEVPESRFTGTIVGVED-SSSQWKDSQWRSLK 330 789*************6..9******************************************.555*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence
MANKGYFMSH NFSAEGEDEL YQELWRLCAG PLVDIPKNEE RVYYFPQGHM EQLEASTNWE 60 LNQRMPMFNL QPKILCCVLD IQLMAEQDTD EVYAQITLLP EADQVEPTNP DPSPPEPPRP 120 KVHFFYKVLT ASDTSTHGGF SIFRKHANEC LPPLDMTQPT PAQELVAKDL HGFEWRFKHI 180 FRGQPRRHLL TTGWSTFVSS KRLVAGDSFV FLRSEKGEVR IGIRRLVCQP CSMPQSMISS 240 QSMHLGVLAT ASHAVATQTM LVVYYKPRTS QFIVGLNKYL EAVNHRYSVG MRFKMHFEGE 300 EVPESRFTGT IVGVEDSSSQ WKDSQWRSLK VQWDEPASVS RPDRVSPWDI EPFVAPVTSP 360 LVHPMSVKNK RHRPHNEPKV SGGNKHSLNM FFDETEANKS ASPRPAFTSF ASSQFGKQND 420 ERKRDTIISC RLFGIDLKSP SLGSAIENRT LKPANNSDSS AEGCFGNTTS AGDSQDNSGL 480 SKDQKHEHLH LPPNEAHGKQ ICSTRSRTKV HMQGVAVGRA VDLTVLSGYD ELVKELKEMF 540 DIQEELHARN KWEIVFTDDE GDVMLMGDHP WPEFCNVAKK IFICPSQDKK SFSAETKSPS 600 CLDSETTTSS

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence

MANKGYFMSH NFSAEGEDEL YQELWRLCAG PLVDIPKNEE RVYYFPQGHM EQLEASTNWE  60
LNQRMPMFNL QPKILCCVLD IQLMAEQDTD EVYAQITLLP EADQVEPTNP DPSPPEPPRP  120
KVHFFYKVLT ASDTSTHGGF SIFRKHANEC LPPLDMTQPT PAQELVAKDL HGFEWRFKHI  180
FRGQPRRHLL TTGWSTFVSS KRLVAGDSFV FLRSEKGEVR IGIRRLVCQP CSMPQSMISS  240
QSMHLGVLAT ASHAVATQTM LVVYYKPRTS QFIVGLNKYL EAVNHRYSVG MRFKMHFEGE  300
EVPESRFTGT IVGVEDSSSQ WKDSQWRSLK VQWDEPASVS RPDRVSPWDI EPFVAPVTSP  360
LVHPMSVKNK RHRPHNEPKV SGGNKHSLNM FFDETEANKS ASPRPAFTSF ASSQFGKQND  420
ERKRDTIISC RLFGIDLKSP SLGSAIENRT LKPANNSDSS AEGCFGNTTS AGDSQDNSGL  480
SKDQKHEHLH LPPNEAHGKQ ICSTRSRTKV HMQGVAVGRA VDLTVLSGYD ELVKELKEMF  540
DIQEELHARN KWEIVFTDDE GDVMLMGDHP WPEFCNVAKK IFICPSQDKK SFSAETKSPS  600
CLDSETTTSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.2	0.0	ARF family protein