PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT39600.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 244aa    MW: 27224.2 Da    PI: 4.8004
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT39600.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.38.9e-1961112156
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 s y+GVr++  +++Wv+eIr+pse   +kr++lg++ t+e+Aa+a++  +++l+g+
  PHT39600.1  61 SIYRGVRRRN-NNKWVCEIREPSE---QKRIWLGTYPTPEMAARAHDVVALALRGN 112
                 57*****887.8*********976...5*************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MNNNINSISY FSDSSMANLE RDYSQEISSS SSEKSGGGLL LAANRLKKRA GRKKFKETRH  60
SIYRGVRRRN NNKWVCEIRE PSEQKRIWLG TYPTPEMAAR AHDVVALALR GNLAILNFED  120
SSWRLSVPVS KDPKELRQAA MIAANAFHQD SDESVGVDYM NQEVNSDDVG GGGASGSDNN  180
IQNMDILCCN NGGENNEMLE IEGLSWQEKM AEGLLFSPTP RLGSCFSWDD VESDVEVSLW  240
SYNI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.22e-43ERF family protein