PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT39640.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 175aa    MW: 18000.1 Da    PI: 8.2032
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT39640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS39.58.4e-131985135200
        GRAS 135 RpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                 + + pp++RiTg +++ s   +   +e +g+rL+++A+++++pfef++ va +++d+e+++L+++pg 
  PHT39640.1  19 KLGRPPRIRITGTDDSISAyaRGGGIEIVGRRLSSVAASCNIPFEFHL-VAASCSDVEIKHLNIRPGS 85 
                 56889**********877788999***********************9.799************9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MMEIMPRGDL KEVLIACAKL GRPPRIRITG TDDSISAYAR GGGIEIVGRR LSSVAASCNI  60
PFEFHLVAAS CSDVEIKHLN IRPGSRIRSE GFRSLAEGES VEYEVENGSD RCTKAVGVTG  120
PDGAAVSGGS RSGGGGGSRG GGGYGGDRGG SRGYGGGDSG YCKSNQQLVN QFLLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.14e-20GRAS family protein