PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT39813.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 591aa MW: 64604.2 Da PI: 5.0532

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT39813.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.4e-12	418	463	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L PHT39813.1 418 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINEL 463 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence
MNIWSTSNTT TATTTNICDA NMMEAFLSSD VPSIWPTVAI QAPYFNQESL QQRLQALIEG 60 GASESWAYAI FWQSSDLEAP SVLGWGDGYY KGEEDKNKRN SSMSASFFTE QEHRKKVLRE 120 LNSLIGGGDA DNTVDEEVTD TEWFFLISMT QSFANGNGLP GLAMYSSSPI WVTGGERLGA 180 SQCERARQAQ GFGLQTIACV PIANGVVELG STELIFQSSD LMNKVKVLFN FNIDMGSEPD 240 PSALWLTDPT SSAAKDSVNV VTNTASKQFV SENAAVQHFT RELNFSGYGF DGRNKNGNGS 300 ISCKPESGEI LNFGDGIKRR ASGGNVSLFS GQSQFGLSED NKNKKSSLVS RGSNEEGMLS 360 FVSSVILPTL TTGKSGGGGD SDHSDLEASV VKEAIVEVEK RPRKRGRKPA NGREEPLNHV 420 EAERQRREKL NQRFYALRAV VPNVSKMDKA SLLGDAIAYI NELKSVVQNS DLNIEDLRNQ 480 IEYLRKELAN KGSSNYPGPS PPQNQDLKIV DLDIDVKVSG WDAMIRIQCS KKNHPAARLM 540 GALKDLDLDV QHASVSVVND LMIQQATVKM SSRVYAQEQL RLALTSKIAE S

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence

MNIWSTSNTT TATTTNICDA NMMEAFLSSD VPSIWPTVAI QAPYFNQESL QQRLQALIEG  60
GASESWAYAI FWQSSDLEAP SVLGWGDGYY KGEEDKNKRN SSMSASFFTE QEHRKKVLRE  120
LNSLIGGGDA DNTVDEEVTD TEWFFLISMT QSFANGNGLP GLAMYSSSPI WVTGGERLGA  180
SQCERARQAQ GFGLQTIACV PIANGVVELG STELIFQSSD LMNKVKVLFN FNIDMGSEPD  240
PSALWLTDPT SSAAKDSVNV VTNTASKQFV SENAAVQHFT RELNFSGYGF DGRNKNGNGS  300
ISCKPESGEI LNFGDGIKRR ASGGNVSLFS GQSQFGLSED NKNKKSSLVS RGSNEEGMLS  360
FVSSVILPTL TTGKSGGGGD SDHSDLEASV VKEAIVEVEK RPRKRGRKPA NGREEPLNHV  420
EAERQRREKL NQRFYALRAV VPNVSKMDKA SLLGDAIAYI NELKSVVQNS DLNIEDLRNQ  480
IEYLRKELAN KGSSNYPGPS PPQNQDLKIV DLDIDVKVSG WDAMIRIQCS KKNHPAARLM  540
GALKDLDLDV QHASVSVVND LMIQQATVKM SSRVYAQEQL RLALTSKIAE S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	400	408	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	0.0	bHLH family protein