PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT39876.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 255aa MW: 28980.9 Da PI: 8.794

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT39876.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.6	5.1e-31	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifs +gklye+ PHT39876.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEF 57 79**********************************************9 PP
2	K-box	101.5	1.2e-33	80	169	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 e++++s++qe++kLk++ e Lqr+qRhllGedL++Ls+keLq+Le+qLe +l + R +K+++++eq+eel++ke+ l + nk+L+ k+ PHT39876.1 80 CGERETQSWYQEVSKLKAKFEALQRTQRHLLGEDLGTLSVKELQNLEKQLEGALAQARHRKTQIMMEQMEELRRKERHLGDVNKQLKIKV 169 56889*********************************************************************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSG RGKLYEFGNA 60 GITKTLERYQ RCCINPQDNC GERETQSWYQ EVSKLKAKFE ALQRTQRHLL GEDLGTLSVK 120 ELQNLEKQLE GALAQARHRK TQIMMEQMEE LRRKERHLGD VNKQLKIKVS LELSSFETEG 180 QGLRALPNFP WSCNASAEAG SSSFHVHHSQ SNHMDCDQPD PVLQIGYQQY MSADGASGSR 240 SNMAIESNII HGWGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	1e-107	MIKC_MADS family protein