PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT39879.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 221aa MW: 25379.2 Da PI: 9.8255

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT39879.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.2	2.5e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaev +iifs++gklye++s PHT39879.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVGLIIFSPRGKLYEFAS 59 8***********************************************86 PP
2	K-box	78	2.4e-26	83	173	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ ++ ++ +qe a L k+ie L++++R+llG++L+s+sl+e +q+e+qLe+s+ iR++K+++++eq+e+l++kek l en +Lr+k+e PHT39879.1 83 QSVEDIQHTKQETASLMKKIELLESSKRKLLGDGLGSCSLEEVKQIEKQLEQSVGIIRARKMQVYREQMERLKEKEKTLLAENVMLREKFE 173 667889**********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVGLIIFSP RGKLYEFASS 60 SIPEVLDRYK RHTKDKVQPD QIQSVEDIQH TKQETASLMK KIELLESSKR KLLGDGLGSC 120 SLEEVKQIEK QLEQSVGIIR ARKMQVYREQ MERLKEKEKT LLAENVMLRE KFEGLEDRRK 180 SSRQTEDVIC ISGGGSDKSD VETELFIGPP HDSRITRPLL N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	1e-88	MIKC_MADS family protein