PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT39941.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 272aa MW: 31559.7 Da PI: 9.794

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT39941.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.7	3e-14	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed ll +++k++G g W++ +++ g+ R++k+c++rw +yl PHT39941.1 14 KGAWTAKEDMLLTEYIKEHGEGtGWRALPKKAGLLRCGKSCRLRWVNYL 62 79******************99*****99**********97 PP
2	Myb_DNA-binding	54.3	3.2e-17	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T+eEd+l+v++ ++lG++ W++Ia +++ gRt++++k++w+++l PHT39941.1 68 RGIFTPEEDDLIVRLYTLLGSR-WSLIAGRIP-GRTDNDIKNYWNTHL 113 788*****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MGRKPCCSKE GLKKGAWTAK EDMLLTEYIK EHGEGTGWRA LPKKAGLLRC GKSCRLRWVN 60 YLKPGLKRGI FTPEEDDLIV RLYTLLGSRW SLIAGRIPGR TDNDIKNYWN THLLKKLKAQ 120 GNEPRRHKSI RKSKEKEKAS SQKKQTRNQK TKERKKKRKI AENDSNIEER EQVAKKTEEQ 180 LQMQDFSQAV SENNYNFTGS SCSQDGTSSG ASTSEINLEE NNYNSGIYEK FQVIDELLLN 240 DQWTEYNNES HMMLKEIYEE YFQLVSKNSL SF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	132	LKKLKAQGNEPRRHKSIRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-61	MYB family protein