PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT39962.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 319aa MW: 36522.5 Da PI: 7.6738

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT39962.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54.3	3.6e-17	47	130	2	86
trihelix 2 WtkqevlaLiearremeerlrrgk..lkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ +++Li++r+e+e+++ ++k k+lWe v+ +m +++g++rs +qCk w+nl +ryk +++ ++ ++pyf +l+ PHT39962.1 47 WSNEGIRDLIAIRSELETEFTSAKrsNLKNLWEIVGVRMnERGGYRRSGEQCKTMWNNLINRYKGKGTSDPDN----GGQFPYFADLH 130 *******************86522669******77889*****************99999984....446999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MFSGDNENIG PFTHPLRLLP AGSISVAAAV SVAGIDGLGG DDRVPPWSNE GIRDLIAIRS 60 ELETEFTSAK RSNLKNLWEI VGVRMNERGG YRRSGEQCKT MWNNLINRYK GKGTSDPDNG 120 GQFPYFADLH ALFSSNTNNA QRLQLEPEAG SQQVRKRPRR TSGDHSSEEI SEDEEGYANE 180 SDEGKLARSN VARKKKTEKE KRPRTSNAEK PPRQASSGSI NNTGRAVDNI QEMLREFLQQ 240 QLSIDMQWRE AMEKRARERE VFEQEWRSSM EKLERDRMMM EQSWREREEQ RRAREESRAE 300 KRDALLSTLL NKLIGENHP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	199	KRPRRTSGDHSSEEISEDEEGYANESDEGKLARSNVARKKKTEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	7e-24	Trihelix family protein