PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT40016.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Protein Properties

Length: 687aa MW: 77629 Da PI: 8.8862

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT40016.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.5	1.4e-14	478	556	6	87
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + +++ ++ l+lp fa+++g+++++ +++l+de+ rsW+v l + ++ +tkGW+ F +an+++ gD F+l+++ PHT40016.1 478 IDPYSIRKPYLYLPLAFAKSNGLVNRR-CKMILRDEKRRSWSVLL--APMGHHVAITKGWRLFRQANNVQIGDPYKFELIEN 556 5678888889***********9766.59***********..999999***********************9874 PP

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence
MKNEHILLNN TLNLLFSRLG KVSKRLDYPW NLKFVTGTPF NASPRRGECV IVIPTATQWN 60 RGDLLDLTNA DLGFTATRSN RGNPLKLDNR RFGLYRDAVA FSSLFSPRRS PIASKTDWSK 120 LPVELLGLIS SRLHFAEDCV RFGAVYVLDK RCWGSSHGKG FRDSFVYKVI LSASPCSSDC 180 VIFAIYADNW KMAFVKLGDV SWTPLSCIRG NVDDAMCHDG KFYAIDTFGE ILIWDLAGSF 240 LKRIAFTPSR EMDNLVKQSF LLNFVIQNVR VIAFTSQMTY PEFSTMQRLA MIWIIWLPKE 300 QFESSPSKGT SEASRLHSPL YELALQALSQ SGAGYDKHAE EECFKRDDPN ANCPSTEGSN 360 LDIKSPHEVF PKVEAEENMP LGRPHFIYII TPYCLSRDHV QLPAPFARDN GLADRKCMIT 420 IRDELRSWKL ILYSSGAQAY ISGTWLIKQD LREKASFQPE EKKSKSKANA NRQFVSTIDP 480 YSIRKPYLYL PLAFAKSNGL VNRRCKMILR DEKRRSWSVL LAPMGHHVAI TKGWRLFRQA 540 NNVQIGDPYK FELIENGTIP ISVFHCDLSV STDIQTRNMN PNRSSFPDGK GPSTRLMANQ 600 LLKDLGVLVS YWKVYTVMGI AKDLVLGTLE HGYEVLDAYR NPGSKTALHL DGNGRYNGVL 660 LAAVVQDAEN HIFPIDFCVA DKECDAS

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence

MKNEHILLNN TLNLLFSRLG KVSKRLDYPW NLKFVTGTPF NASPRRGECV IVIPTATQWN  60
RGDLLDLTNA DLGFTATRSN RGNPLKLDNR RFGLYRDAVA FSSLFSPRRS PIASKTDWSK  120
LPVELLGLIS SRLHFAEDCV RFGAVYVLDK RCWGSSHGKG FRDSFVYKVI LSASPCSSDC  180
VIFAIYADNW KMAFVKLGDV SWTPLSCIRG NVDDAMCHDG KFYAIDTFGE ILIWDLAGSF  240
LKRIAFTPSR EMDNLVKQSF LLNFVIQNVR VIAFTSQMTY PEFSTMQRLA MIWIIWLPKE  300
QFESSPSKGT SEASRLHSPL YELALQALSQ SGAGYDKHAE EECFKRDDPN ANCPSTEGSN  360
LDIKSPHEVF PKVEAEENMP LGRPHFIYII TPYCLSRDHV QLPAPFARDN GLADRKCMIT  420
IRDELRSWKL ILYSSGAQAY ISGTWLIKQD LREKASFQPE EKKSKSKANA NRQFVSTIDP  480
YSIRKPYLYL PLAFAKSNGL VNRRCKMILR DEKRRSWSVL LAPMGHHVAI TKGWRLFRQA  540
NNVQIGDPYK FELIENGTIP ISVFHCDLSV STDIQTRNMN PNRSSFPDGK GPSTRLMANQ  600
LLKDLGVLVS YWKVYTVMGI AKDLVLGTLE HGYEVLDAYR NPGSKTALHL DGNGRYNGVL  660
LAAVVQDAEN HIFPIDFCVA DKECDAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26680.1	3e-20	B3 family protein