PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT40216.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 293aa    MW: 33004.9 Da    PI: 7.4173
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT40216.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-172673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l ++v   G g+W+t +++ g+ R++k+c++rw +yl
       PHT40216.1 26 KGPWTPEEDEILTKYVSIEGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 73
                     79******************************99************97 PP
2Myb_DNA-binding48.71.7e-1579124148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg  T +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
       PHT40216.1  79 RGHITLDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 124
                      677799****************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MRTPSSSSSS RIKVLTPCCN KIGLKKGPWT PEEDEILTKY VSIEGEGRWR TLPKKAGLLR  60
CGKSCRLRWM NYLRPSVKRG HITLDEEDLI LRLHRLLGNR WSLIAGRIPG RTDNEIKNYW  120
NTHLSKKLIS QGIDPRTHKP LILNPNSSSD DNHIIISNNK TNSSSSPSSS SKLANNDNLN  180
TINPNPISYN INNNNNRPEE ITSSGDCQHQ SCYAMLVNYD DDHMNIAVTT EGDDGMNCCT  240
DDVFSSFLNS LINEDMFNCQ NQQINGTLQD FDPFIASSTL SSNQNNPKRS MDE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-78MYB family protein