PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT40370.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 546aa MW: 62059.5 Da PI: 5.4057

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT40370.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.3	4.2e-11	336	377	8	54
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR+++N+++ Lr l+Pk + Kl+ a+iL A+eY+ +L PHT40370.1 336 AERNRRKKLNERLYALRALVPKiS------KLDRASILGDAIEYVMEL 377 6*******************66......************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MELMHLMDRL RPVMGLKSWD YCVLWKLSED QRFLEWICCC CGGADKNMHS CEQELFFPDS 60 STSTCRDVMF QHPRTIACDL LAQLPPSLAL DCGTYAMALL SNQAKWMNFV PFSISNMTNE 120 IMGTRALVPS PLGLLELFST QQLPEDAEVI EFVSAQCNIY VEQQAMTNSS FSDGVEESTS 180 KPFPLVGDDH IKVSQNHYQQ TVSPAATSRG HSDNLSYDFP LKRKHLDTSS MNFLPQLSTY 240 STPELYNKTG GSMLFDQRTS DVTPFSENRY MSEMDAYLQK QMMRSSSTQS AIDDESVKHD 300 NGRSNSGSDS DQNEEEDDPK YRRRNGKGPQ SKNLWAERNR RKKLNERLYA LRALVPKISK 360 LDRASILGDA IEYVMELKKQ VKDLQLELEE HSDDEGRRNQ DQIHPDVLSH NGTKNGPKSE 420 NGKRSNGNGH RELSTNSNGC TDPFRKIQEV EENDKLQQME PQVEVAQLDG NEFFVKVFRE 480 HKTGGFVRIL DALNSLGLEV TNVNATRHTC LVSNIFKVEQ KRDNEIVQAD HVRDTLLELT 540 RNPSRG

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MELMHLMDRL RPVMGLKSWD YCVLWKLSED QRFLEWICCC CGGADKNMHS CEQELFFPDS  60
STSTCRDVMF QHPRTIACDL LAQLPPSLAL DCGTYAMALL SNQAKWMNFV PFSISNMTNE  120
IMGTRALVPS PLGLLELFST QQLPEDAEVI EFVSAQCNIY VEQQAMTNSS FSDGVEESTS  180
KPFPLVGDDH IKVSQNHYQQ TVSPAATSRG HSDNLSYDFP LKRKHLDTSS MNFLPQLSTY  240
STPELYNKTG GSMLFDQRTS DVTPFSENRY MSEMDAYLQK QMMRSSSTQS AIDDESVKHD  300
NGRSNSGSDS DQNEEEDDPK YRRRNGKGPQ SKNLWAERNR RKKLNERLYA LRALVPKISK  360
LDRASILGDA IEYVMELKKQ VKDLQLELEE HSDDEGRRNQ DQIHPDVLSH NGTKNGPKSE  420
NGKRSNGNGH RELSTNSNGC TDPFRKIQEV EENDKLQQME PQVEVAQLDG NEFFVKVFRE  480
HKTGGFVRIL DALNSLGLEV TNVNATRHTC LVSNIFKVEQ KRDNEIVQAD HVRDTLLELT  540
RNPSRG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	322	343	RRRNGKGPQSKNLWAERNRRKK
2	340	382	RRKKLNERLYALRALVPKISKLDRASILGDAIEYVMELKKQVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-133	bHLH family protein