PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT40466.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 429aa MW: 47713.2 Da PI: 7.1431

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT40466.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.3	6.6e-39	60	215	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssasec...eaessss 80 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk++eWLl++a p+i el+ + ++++ ++ e ++ + PHT40466.1 60 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGCDQPSKAVEWLLKAAAPSIAELPPLeafpdtlqlsdekrssvGTEPDFDSadvEMDDYPN 158 689***********************************************************99999999888888777333333333335555555 PP TCP 81 sasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136 +++++++++ +++++ ++s++s+ l++++ +sr kar+ra+er +ek + k+++ PHT40466.1 159 YKQQQQQQQQGQQKPCCSNSETSKGPGLSFSRsDSRLKARERAKERATEKEKEKENK 215 55555556777778888999999999999**********999999988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MEMEEIRTEE CKFPRIRNKE DEQYQYEVDD AGEDKKRGLG GIAKFYGRPS SRIVRVSRAS 60 GGKDRHSKVL TSKGLRDRRV RLSVNTAIQF YDLQDRLGCD QPSKAVEWLL KAAAPSIAEL 120 PPLEAFPDTL QLSDEKRSSV GTEPDFDSAD VEMDDYPNYK QQQQQQQQGQ QKPCCSNSET 180 SKGPGLSFSR SDSRLKARER AKERATEKEK EKENKSSVVA HHQNVHPSSS FTELLTGGMS 240 DNNNNNSNTS PNASIHQNMP RQWSTNPLEY FTSGLLGPSS TRGIDNTSGF SNQIYMGNPL 300 QSLRVVPSPM FSITGDHRPE LQHFPFGGDN LVPSVTTSGG SNCNGHRSNT SNEYNLNFSI 360 SSSASGFNRG TLQSNSSSSQ STMPHFQRFS PINGSQNLFH GTTTEYDAGL HLFYGNGYGH 420 SDQKEKEKN

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MEMEEIRTEE CKFPRIRNKE DEQYQYEVDD AGEDKKRGLG GIAKFYGRPS SRIVRVSRAS  60
GGKDRHSKVL TSKGLRDRRV RLSVNTAIQF YDLQDRLGCD QPSKAVEWLL KAAAPSIAEL  120
PPLEAFPDTL QLSDEKRSSV GTEPDFDSAD VEMDDYPNYK QQQQQQQQGQ QKPCCSNSET  180
SKGPGLSFSR SDSRLKARER AKERATEKEK EKENKSSVVA HHQNVHPSSS FTELLTGGMS  240
DNNNNNSNTS PNASIHQNMP RQWSTNPLEY FTSGLLGPSS TRGIDNTSGF SNQIYMGNPL  300
QSLRVVPSPM FSITGDHRPE LQHFPFGGDN LVPSVTTSGG SNCNGHRSNT SNEYNLNFSI  360
SSSASGFNRG TLQSNSSSSQ STMPHFQRFS PINGSQNLFH GTTTEYDAGL HLFYGNGYGH  420
SDQKEKEKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	2e-43	TCP family protein