PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT40467.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 416aa MW: 46264.6 Da PI: 6.3575

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT40467.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.5	2.3e-38	59	208	2	135
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssasec...eaessss 80 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG ++sk +eWLl++a p+i el+ + + + ++++++ PHT40467.1 59 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGCEQPSKVVEWLLKEAAPSISELPPLeafpdtlqlsdekrssvG------TepgFDSAQVE 151 689***********************************************************777776666443333221......02232333334 PP TCP 81 sasnsssg.kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135 +++ ++ + ++++++ + ++s++s+ s l l++ +sr kar+rarer +ek + k++ PHT40467.1 152 MDDDPNYNqQQQQEKSCCSNSETSKGSRLTLSRsNSRLKARERARERATEKEKEKEN 208 444444443445555599999999999999**********99999988865 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MEEIQTEECK FPRISNKDDK QYQYDVDDAG EVNKCTDLGG IGKLYGWPSS RIVRESRASG 60 GKDRHSKVLT SKGLRDRRVR LSVNTAIQFY DLQDRLGCEQ PSKVVEWLLK EAAPSISELP 120 PLEAFPDTLQ LSDEKRSSVG TEPGFDSAQV EMDDDPNYNQ QQQQEKSCCS NSETSKGSRL 180 TLSRSNSRLK ARERARERAT EKEKEKENKY SVVAHHQNMH PISSFTELLT GGMNDNNSDN 240 KSNTSPNGPI HQNTPRQWCT NPLEQFTSGL LGSSTTRGID NSTGFSGQIY FENPQQPLLA 300 VSSSMFSISR DHQPELLHFP FGSDNLVPSV TSSQSNTSNE YNLNFSLSSS ASGFNRGTLQ 360 SNSSSSLSTL PHFQRLSPTD GSQSLFHGTT TEYDARLQLF YGNGYGHSDQ KGKGKN

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MEEIQTEECK FPRISNKDDK QYQYDVDDAG EVNKCTDLGG IGKLYGWPSS RIVRESRASG  60
GKDRHSKVLT SKGLRDRRVR LSVNTAIQFY DLQDRLGCEQ PSKVVEWLLK EAAPSISELP  120
PLEAFPDTLQ LSDEKRSSVG TEPGFDSAQV EMDDDPNYNQ QQQQEKSCCS NSETSKGSRL  180
TLSRSNSRLK ARERARERAT EKEKEKENKY SVVAHHQNMH PISSFTELLT GGMNDNNSDN  240
KSNTSPNGPI HQNTPRQWCT NPLEQFTSGL LGSSTTRGID NSTGFSGQIY FENPQQPLLA  300
VSSSMFSISR DHQPELLHFP FGSDNLVPSV TSSQSNTSNE YNLNFSLSSS ASGFNRGTLQ  360
SNSSSSLSTL PHFQRLSPTD GSQSLFHGTT TEYDARLQLF YGNGYGHSDQ KGKGKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	1e-42	TCP family protein