PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT40624.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 1032aa MW: 113912 Da PI: 4.9632

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT40624.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59	1.1e-18	36	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l PHT40624.1 36 KGQWTPEEDEILCKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 82 799**************************9.**********986 PP
2	Myb_DNA-binding	63.6	3.8e-20	88	134	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde ++++vk++G++ W+tIa++++ gR +kqc++rw+++l PHT40624.1 88 KGPWSKEEDEVIAELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 134 79****************************.***********97 PP
3	Myb_DNA-binding	46.3	9.5e-15	140	182	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++ +G++ W+ + ++ gRt++ +k++w+ PHT40624.1 140 KEAWTQEEEVTLIHAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 182 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1032 aa Download sequence
MESDRISTPS DGTSSSFQRV RSLHGRTSGP TRRSTKGQWT PEEDEILCKA VQRFKGKNWK 60 KIAECFKDRT DVQCLHRWQK VLNPELVKGP WSKEEDEVIA ELVKKYGPKK WSTIAQHLPG 120 RIGKQCRERW HNHLNPGINK EAWTQEEEVT LIHAHQIYGN KWAELTKFLP GRTDNAIKNH 180 WNSSVKKKLD VYLASGALAK FPTLPNVNHQ NQSIPSSIKL QQSSEDDSVR KEGTEMEEVS 240 ECSQSSNLAG CSQSTSDMGN TFVYTREEGK LLEDSNYRKD PSASSAPCSE YYTPAFEDIT 300 FSVAEVPSEL AESKLLEHNF SQNWATSMGK DWQFNPDDIP NISPLELMQD SSGFFMQCLT 360 GTGNHDMVTF PQQNEMKFET TNDGSMVVGL HKPNEMFTSV EGCSMVYPEA GIPQCFPSEI 420 GMNGVDETAG SMIYQISEGG NMSIEKCNPL CSDVMGTPSC QPCSVPSQFS SEQSSHMFGI 480 ASNQFHNPSH TARESQTNKC DGFLYPMESD TPCDNIMDDP LLKDQLDQTS DSVQLVSVND 540 FRSTPSNTIQ TCPLVNENSA VKEDQMDGGA LCYEPPRFPS LDVPFFSCDL IQSGTDTHQE 600 YSPLGIRQLM MTSVNCLTPF KLWDSPTRDG SPDAVLRSAA KTFTSTPSIL KKRHRDLVSP 660 LSEKRCGKKL ESDLRQESFS NLTKDFSRLD VMFDDSANEK AMSSLTKDQT LELQASEDKE 720 NINPTEDGQK EEDKGRDGHS SCGTSGRQLD GGEVHYKDQG TRESKRLGAK DAVGKIKQPS 780 GVLVELNASG LFFSPDRFGA KSDRGTNLSN KALGNQYSSR LEAASNQGSV SSSFETSSFS 840 VICSPRIHGK NITTSMQSAP TSTALESSAE TSGNGAGAGI IASISGETPY KRSIESPSAW 900 KSPWFLNSFL SSPRLDNELT FEDLALFMSP GDRSYDAIGL MKQLSEQTAG AFADAQEVLG 960 GDTPESILRG RNSKNQNADE NRSLLSANAM SERRTLDFSE CGSPEKEKET EKCSTNNNSF 1020 SSPSSYLLKG CR

Sequence ? help Back to Top

Protein Sequence Length: 1032 aa Download sequence

MESDRISTPS DGTSSSFQRV RSLHGRTSGP TRRSTKGQWT PEEDEILCKA VQRFKGKNWK  60
KIAECFKDRT DVQCLHRWQK VLNPELVKGP WSKEEDEVIA ELVKKYGPKK WSTIAQHLPG  120
RIGKQCRERW HNHLNPGINK EAWTQEEEVT LIHAHQIYGN KWAELTKFLP GRTDNAIKNH  180
WNSSVKKKLD VYLASGALAK FPTLPNVNHQ NQSIPSSIKL QQSSEDDSVR KEGTEMEEVS  240
ECSQSSNLAG CSQSTSDMGN TFVYTREEGK LLEDSNYRKD PSASSAPCSE YYTPAFEDIT  300
FSVAEVPSEL AESKLLEHNF SQNWATSMGK DWQFNPDDIP NISPLELMQD SSGFFMQCLT  360
GTGNHDMVTF PQQNEMKFET TNDGSMVVGL HKPNEMFTSV EGCSMVYPEA GIPQCFPSEI  420
GMNGVDETAG SMIYQISEGG NMSIEKCNPL CSDVMGTPSC QPCSVPSQFS SEQSSHMFGI  480
ASNQFHNPSH TARESQTNKC DGFLYPMESD TPCDNIMDDP LLKDQLDQTS DSVQLVSVND  540
FRSTPSNTIQ TCPLVNENSA VKEDQMDGGA LCYEPPRFPS LDVPFFSCDL IQSGTDTHQE  600
YSPLGIRQLM MTSVNCLTPF KLWDSPTRDG SPDAVLRSAA KTFTSTPSIL KKRHRDLVSP  660
LSEKRCGKKL ESDLRQESFS NLTKDFSRLD VMFDDSANEK AMSSLTKDQT LELQASEDKE  720
NINPTEDGQK EEDKGRDGHS SCGTSGRQLD GGEVHYKDQG TRESKRLGAK DAVGKIKQPS  780
GVLVELNASG LFFSPDRFGA KSDRGTNLSN KALGNQYSSR LEAASNQGSV SSSFETSSFS  840
VICSPRIHGK NITTSMQSAP TSTALESSAE TSGNGAGAGI IASISGETPY KRSIESPSAW  900
KSPWFLNSFL SSPRLDNELT FEDLALFMSP GDRSYDAIGL MKQLSEQTAG AFADAQEVLG  960
GDTPESILRG RNSKNQNADE NRSLLSANAM SERRTLDFSE CGSPEKEKET EKCSTNNNSF  1020
SSPSSYLLKG CR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	0.0	MYB family protein