PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT40729.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 131aa    MW: 14691.1 Da    PI: 10.8508
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT40729.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.51.3e-211864349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                ie k   qvtfskRr g++KKA+EL++LC++e+a+i+fs+  k++ +
  PHT40729.1 18 IEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPARKIFSF 64
                7788889*********************************9998877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    
MANKPSSMGR QKIKIVKIEV KNHLQVTFSK RRSGLFKKAS ELCTLCGVEI AIIVFSPARK  60
IFSFGHSNVE SLIDRFLSRN NTNNNPIANN SLQLVEAHRN ANVCGLNLQL TQILGVVEIE  120
KKRGESLDQM R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-44M-type_MADS family protein