PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT40737.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 223aa    MW: 25130.6 Da    PI: 8.9254
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT40737.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.75.5e-221765250
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                +ie k   qvtfskRr g++KKA+EL++LC++e+a+i+fs+  k++ +s
  PHT40737.1 17 KIEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPARKVFSFS 65
                58888899*************************************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MAKKPSSMGR QKIKIAKIEV KNHLQVTFSK RRSGLFKKAS ELCTLCGVEI AIIVFSPARK  60
VFSFSHTNVE SLIDRFLSRN NTNNNPYANN SLQLVEAHRN ANVCGLNLEL TQILGEVEIE  120
KKRGESLDQI RKTSQSQCWW EAPISQLDLQ ELEQLKDSME ALKKYVTNQA SKFMVNEIVN  180
SSTFFGDNGN GIFDNNDIKP PRTTPSLTDL YNHSLGFDSA ALF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-52M-type_MADS family protein