PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT40739.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 396aa MW: 44419.5 Da PI: 5.8523

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT40739.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.9	1.8e-20	190	237	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie k +vtfskRr g++KKA+EL++LC++e+a+i+fs+ k++ + PHT40739.1 190 KIEVKNHLHVTFSKRRSGLFKKASELCTLCGVEIAMIVFSPARKVFSF 237 57888889**********************************999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MIMINPYTDE VKNNVFDGLQ KELEGVIVLI SNEDSKDDGD LGGNPVGVCI GDNDTLSTSK 60 DTKVTSFPGD LHKYVVALEE VMDLGGKPVV VCIGDDDTPS TLKDIKGTSF PGDLHKRIVT 120 LGKVVLDIAA YIREKKMNKK KKDEREHERV HVELHESERN EEVEKKIKMD ELATVVKPSS 180 MGRQKIKIAK IEVKNHLHVT FSKRRSGLFK KASELCTLCG VEIAMIVFSP ARKVFSFGHP 240 NVEYLIDRFL SRNNTNNSPY ANNSLQLVEA HRNANVCGLN LQLTQILGEV EIEKKRGESL 300 DQMRKTSQSQ CWWEAPISQL DLQELEQLKD SMEALKKYVT NQASMFMVNE IANSSTFFGD 360 NGNGIFDNYD IQPPRTMPSS SDLYNHSLGF DSSALF

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MIMINPYTDE VKNNVFDGLQ KELEGVIVLI SNEDSKDDGD LGGNPVGVCI GDNDTLSTSK  60
DTKVTSFPGD LHKYVVALEE VMDLGGKPVV VCIGDDDTPS TLKDIKGTSF PGDLHKRIVT  120
LGKVVLDIAA YIREKKMNKK KKDEREHERV HVELHESERN EEVEKKIKMD ELATVVKPSS  180
MGRQKIKIAK IEVKNHLHVT FSKRRSGLFK KASELCTLCG VEIAMIVFSP ARKVFSFGHP  240
NVEYLIDRFL SRNNTNNSPY ANNSLQLVEA HRNANVCGLN LQLTQILGEV EIEKKRGESL  300
DQMRKTSQSQ CWWEAPISQL DLQELEQLKD SMEALKKYVT NQASMFMVNE IANSSTFFGD  360
NGNGIFDNYD IQPPRTMPSS SDLYNHSLGF DSSALF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	168	KKKKDEREHERVHVELHESERNEEVEKKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	9e-49	M-type_MADS family protein