PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT40742.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 201aa    MW: 22669.7 Da    PI: 6.2775
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT40742.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.62.8e-172061142
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                k+i+++  r+vtfskRr g++KKA+EL++L++ e+ +++ s 
  PHT40742.1 20 KPINSQNSRHVTFSKRRLGLFKKASELCILTAEEIVILVQSL 61
                689***********************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MNVNTNVVKK TQGRRKIAIK PINSQNSRHV TFSKRRLGLF KKASELCILT AEEIVILVQS  60
LKCQCLFTFG HPSADAVIDR YVTGISSSLL SSLTIDEFNL QQNNQYYSHM CKDLEAEKKK  120
KENIEEEKLV NIDDNNNGGY WLNEPIDTKG IDELEEFMVA LDNLKKNVTT SVDELSLLNG  180
SSSSNSTMKI ARFGAEDQFL N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-22M-type_MADS family protein