PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT40748.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 216aa    MW: 24560 Da    PI: 8.3284
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT40748.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF641.6e-201057249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie k   qvtfskRr  ++KKA+EL++LC++e+a+i+fs+  k++ +
  PHT40748.1 10 KIEVKNHLQVTFSKRRSSLFKKASELCTLCGVEIAIIVFSPARKVFSF 57
                58888899**********************************999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MGRQKIKIAK IEVKNHLQVT FSKRRSSLFK KASELCTLCG VEIAIIVFSP ARKVFSFGHP  60
NVESLIVRFL SRNNTNNNPI VNNSLQLVEA HRNANVCGFN LQLTQILGEV EIEKKRGESL  120
DQMRKTSQSQ CWWEAPISQI DLQELEQLKD SMEALKKYVT NQESKFMLNE ISNSSTFFGD  180
NSNGIFENYD IMTPRTMPSS SDLYNHSLGF DSAALF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-54M-type_MADS family protein