PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT40751.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 200aa    MW: 22636.9 Da    PI: 8.6057
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT40751.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.65.7e-171764249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie k   qvtfsk   g++K A+EL++LC++e+a+i+fs+t k++ +
  PHT40751.1 17 KIEVKNHLQVTFSKHCSGLFKIASELCTLCGVEIAIIVFSPTRKFFSF 64
                58888899************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MTKKRSSMGR QKIQIAKIEV KNHLQVTFSK HCSGLFKIAS ELCTLCGVEI AIIVFSPTRK  60
FFSFGHRNVE SFNDRFLVRN NTNNNPIANG SLQLVETHRN ANVCGLNLQL TQILGEVEIE  120
KKRGESLDQM RKTSQSQCWC EAPISQLDLQ ELEQLKDSME ALKKYVTNQA SKFMVNEIAN  180
SSTFIGDNGN GIFDNYDIKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-49M-type_MADS family protein