PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT40754.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25296.8 Da    PI: 9.4693
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT40754.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.42.2e-191864349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                i+ k   qvtfskRr g +KKA+EL++LC++e+a+i+fs+  k++ +
  PHT40754.1 18 IKVKNHLQVTFSKRRSGHFKKASELCTLCGVEIAIIVFSHVRKVFSF 64
                6667788*********************************9999877 PP
2K-box14.91.1e-061261802779
       K-box  27 eienLq.reqRhllGed.LesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                  +++++ ++qR+  +e  +++L+l+eL+qL++ Le+  k + ++ +++++++i +
  PHT40754.1 126 SLDQMRkTSQRKCWWEApISQLDLQELEQLKDSLESLKKYVYNQTSKFMVNEIAN 180
                 466777788999999955*****************99999***********9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MAKKPSSMGR QKIKIAKIKV KNHLQVTFSK RRSGHFKKAS ELCTLCGVEI AIIVFSHVRK  60
VFSFGHPNVE SLIDWFLSRN NTNNNPIVNN SLQLFEAHLN ANVCGLNLQL TQILGEVEIE  120
KKKGESLDQM RKTSQRKCWW EAPISQLDLQ ELEQLKDSLE SLKKYVYNQT SKFMVNEIAN  180
SSNFFGDNGN GIFDNYDTKP PRTMPSSSDL DNHSLGFDSA APF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-46M-type_MADS family protein